Microbial Genome Sequencing Project - Gordon and Betty Moore Foundation

Microbial Genome Sequencing Project - Gordon and Betty Moore Foundation

Microbial Genome Sequencing Project

List of Strains

Last Updated: 03/31/08
Phylum Genus Species Strain Location Collected Researcher Released
Date
PlanctomycetesPlanctomyces marisDSM 8797TCoastal bacterioplankton, Puget Sound, WashingtonR. Amann
Lab Web site
5/30/07
CyanobacteriaProchlorococcus sp.MIT9301Sargasso Sea 34° 45.5'N; 66° 11.1'WP.Chisholm
Lab Web site
1/11/07
CyanobacteriaProchlorococcus sp.NATL1ANorth Atlantic OceanP.Chisholm
Lab Web site
1/11/07
CyanobacteriaCrocosphaera watsoniiWH000222º45 N 158º00 WJ. Waterbury
Lab Web site
BacteroidetesNot yet validly describedALC-1Scripps PierF. Azam
Lab Web site
6/13/07
ProteobactariaNot yet validly describedSWAT-3Scripps PierF. Azam
Lab Web site
4/16/07
ProteobactariaNot yet validly describedTW-7coastal, off Scripps, detritus prepared from the diatom Talassiosira weissflogiiF. Azam
Lab Web site
12/08/06
ProteobacteriaRoseovarius sp.TM1035Dinoflagellate cultureR. Belas
Lab Web site
5/30/07
ProteobacteriaAlcanivorax sp.DG881Paralytic shellfish producing dinoflagellate Gymnodinium catenatum isolated from the Derwent estuary, Tasmania, Australia. DG881 was isolated from a clonal culture of this dinoflagellate in Scotland 2001.C. Bolch
Lab Web site
9/17/07
ProteobacteriaOctadecabacter antarcticus307McMurdo Sound, Antarctica (77° 53´ S, 166° 35´E)T. Brinkhoff / B. Wawrik
Lab Web site
9/26/07
CyanobacteriaCalothrix sp.SC01Station Aloha (22.75N, 158W, 27Nov2004)J. Zehr
Lab Web site
ProteobacteriaSilicibacter-Ruegeria subgroupKLH11Key Largo, Florida from the sponge Mycale laxissimaR. Hill
Lab Web site
ProteobacteriaRuegeria sp.R11isolated from the surface of Delisea pulchra (red macro alga) from Bare Island, Botany Bay, Sydney, Australia (33º59’38’’ S, 151º16’00’’E)S. Kjelleberg
Lab Web site
ProteobacteriaOvobacter propellensOp_Nibab3marine sulfidic sediments at Niva beach (Denmark)G. Muyzer
Lab Web site
ProteobacteriaThioturbo danicusTd_Nivab1marine sulfidic sediments at Niva beach (Denmark)G. Muyzer
Lab Web site
ProteobacteriaThiovulum majusTm_Nivab2marine sulfidic sediments at Niva beach (Denmark)G. Muyzer
Lab Web site
ProteobacteriaNot yet validly describedNOR5-1BSylt, North Sea, GermanyR. Amann
Lab Web site
ProteobacteriaNot yet validly describedNOR5-3Sylt, North Sea, GermanyR. Amann
Lab Web site
ProteobacteriaNot yet validly describedHTCC2148station NH15, Oregon Coast, USAB. Fuchs
Lab Web site
ProteobacteriaSAR116HIMB90Kaneohe Bay, HawaiiM. Rappe
Lab Web site
ProteobacteriaSAR11HIMB64Kaneohe Bay, HawaiiM. Rappe
Lab Web site
ProteobacteriaAEGEAN_169 clade (SAR11-like)HIMB37Kaneohe Bay, HawaiiM. Rappe
Lab Web site
ProteobacteriaSilicibacterTrichCH4BIsolated from Trichodesmium colonies collected in the Caribbean SeaK. Barbeau/E. Mann
Lab Web site
ProteobacteriaCitreicella sp.SE45Salt marshes of southeastern US coastA. Buchan
Lab Web site
CyanobacteriaSynechococcus sp.WH8109Sargasso Sea 39°38.6'N; 70°27.72'WD. Lindell
ProteobacteriaThalassiobium sp.R2A62Subsurface water samples were collected in Niskin bottles at a station located 8 km west of the mouth of Yaquina Bay, Oreg. (44 39.19N, 124 10.69W)M. Suzuki
Lab Web site
CyanobacteriaProchlorococcus sp.UH1830122.75N, 158W (date: 2007-07-14)E. Zinser
Lab Web site
ProteobacteriaSilicibacter lacuscaerulensisITI-1157Blue Lagoon, IcelandE. Zinser, A. Buchan
CrenarchaeotaNot yet validly describedBG20Coastal/estuarine sediments (California)C. Francis
Lab Web site
CyanobacteriaSynechococcus sp.UW69Sargasso Sea, 34°11'N, 70°12.5'W, 3/23/2002G. Rocap
Lab Web site
CyanobacteriaGloeothece sp.PCC6909/1N/AD. Sharif, G. Van Keulen
CyanobacteriaSynechococcus sp.RCC1020South East Pacific, 136 °59 'W 9 °4 'S, station: HNL3D. Scanlan
Lab Web site
ProteobacteriaOctadecabacter arcticus238350 km offshore off Deadhorse, Alaska (73° 01´N, 148° 31 ´W)T. Brinkhoff / B. Wawrik
Lab Web site
1/08/08
ProteobacteriaRoseobacter litoralisOch 149From seaweed (not identified),T. Brinkhoff / B. Wawrik
Lab Web site
6/13/07
ProteobacteriaRoseobacter gallaeciensisBS107Seawater from larval cultures of the scallop Pecten maximus, in A Coruna, Galicia, SpainT. Brinkhoff / B. Wawrik
Lab Web site
10/20/07
CyanobacteriaProchlorococcus sp.MIT9202South PacificP.Chisholm
Lab Web site
ProteobacteriaVibrio parahaemolyticus16Tampa Bay; also detected in HawaiiR. Edwards
Lab Web site
FirmicutesBacillus sp.B14905Offshore Gulf of MexicoR. Edwards
Lab Web site
1/11/07
ProteobacteriaRoseobacter sp.GAI101Coastal seawater collected off Georgia in December 1997R. Edwards
Lab Web site
ProteobacteriaRoseobacter sp.AzwK-3bElkhorn Slough, estuary of Monterey Bay.C. Francis
Lab Web site
5/11/07
ProteobacteriaNot yet validly described, RCA cladeHTCC2150Coastal Pacific Ocean, Newport OregonS. Giovannoni / J. Cho
Lab Web site
1/11/07
ProteobacteriaNot yet validly described, OM43 cladeHTCC2181Coastal Pacific Ocean, Newport OregonS. Giovannoni / J. Cho
Lab Web site
3/1/07
ProteobacteriaNot yet validly described, OM42 cladeHTCC2255Coastal Pacific Ocean, Newport OregonS. Giovannoni / J. Cho
Lab Web site
9/12/06
ProteobacteriaSAR11 cluster/PelagibacterHTCC7211BATS Bermuda-Atlantic-Time-Series study siteS. Giovannoni / J. Cho
Lab Web site
1/08/08
ProteobacteriaNot yet validly describedHTCC5015Sargasso Sea, Atlantic Ocean, BATSS. Giovannoni / J. Cho
Lab Web site
1/08/08
VerrucomicrobiaNot yet validly describedDG1235Isolated in Scotland from a clonal culture of the dinoflagellate Scrippsiella trochoidea. S. trochoidea was isolated in Plymouth harbour, United Kingdom.D. Green
Lab Web site
9/17/07
ProteobacteriaMarinobacter sp.DG893Isolated in Scotland from a clonal culture of the paralytic shellfish producing dinoflagellate Gymnodinium catenatum. G. catenatum was isolated from the Yellow Sea, Korea in 1998.D. Green
Lab Web site
5/30/07
ProteobacteriaNot yet validly describedBAL199Baltic proper, St. BY31 (N 58° 35.90', E 18° 14.21')A. Hagström
Lab Web site
6/13/07
ProteobacteriaBrevundimonas sp.BAL3Baltic Sea (63.30N, 19.48E)A. Hagström
Lab Web site
9/17/07
BacteroidetesNot yet validly describedBAL38Baltic Sea (63.30N, 19.48E)A. Hagström
Lab Web site
3/1/07
BacteroidetesPedobacter sp.BAL39Baltic Sea (63.30N, 19.48E)A. Hagström
Lab Web site
5/11/07
ProteobacteriaPseudovibrio sp.JE062Key Largo, Florida from the sponge Mycale laxissima collected at ca. 20 mR. Hill
Lab Web site
ProteobacteriaThioploca araucaeTha-CCLShelf off Concepcion-ChileV. Gallardo
Lab Web site
ProteobacteriaRhodobacterales bacteriumY4ICoastal seawater near St. Mary's GeorgiaM. Moran / J. González / A. Buchan
Lab Web site
1/16/08
BacteroidetesNot yet validly describedSCB49Southern California Bight (32.53N, 117.15W)A. Hagström
Lab Web site
5/30/07
ProteobacteriaStenotrophomonas sp.SKA14Skagerrak (57.57N, 10.44E)A. Hagström
Lab Web site
BacteroidetesKordia algicidaOT-1Masan Bay, South Sea, KoreaS. Kim
Lab Web site
6/13/07
ProteobacteriaStappia aggregata aggregataIAM12614Baltic Sea sedimentG. King
Lab Web site
11/27/06
BacteroidetesAlgoriphagus sp.PR1isolated from a choanoflagellate cultureN. King
Lab Web site
1/11/07
ProteobacteriaRoseobacter gallaeciensis2.10surface of the marine algae Ulva lactuca Clovelly Sydney, Australia)S. Kjelleberg
Lab Web site
6/13/07
ProteobacteriaNot yet validly describedGD 1Gotland Deep, Baltic Sea, pelagic redoxcline of the Baltic SeaM. Labrenz / K. Jürgens
Lab Web site
1/16/08
CyanobacteriaCyanobium sp.PCC 7001Long Island, NY, USAE. Lilly
Lab Web site
1/08/08
ProteobacteriaRoseobacter sp.CCS2near Bodega Head County park, California, lat/long data are:123 degrees 3.97 west and 38 degrees 18.30 north 123 degrees 3.97 west and 38 degrees 18.30 northM. Moran / J. González / A. Buchan
Lab Web site
3/1/07
ProteobacteriaRhodobacterales bacteriumY4ICoastal seawater near St. Mary's GeorgiaM. Moran / J. González / A. Buchan
Lab Web site
ProteobacteriaSagittula stellataE37coastal GeorgiaM. Moran / J. González / A. Buchan
Lab Web site
1/11/07
ProteobacteriaLimnobacter sp.MED105E Mediterranean Sea (32.81N, 34.69E)J. Pinhassi / C. Pedrós-Alió
Lab Web site
5/11/07
ProteobacteriaVibrio shiloiAK1Bleached coral MediterreaneanE. Rosenberg
Lab Web site
5/30/07
ProteobacteriaMethylophaga sp.DMS010unialgal Emiliania huxleyi cultureH. Schaefer
Lab Web site
9/17/07
ProteobacteriaPlesiocystis pacificaSIR-1China coastal waterL. Shimkets
Lab Web site
5/11/07
CyanobacteriaCyanothece sp.CCY0110coastal waters off ZanzibarL. Stal
Lab Web site
3/1/07
CyanobacteriaSynechococcus sp.PCC 7335Snail shell, intertidal zone, Puerto Penasco, MexicoN.